Download Next-Generation Sequencing Data Analysis by Xinkun Wang PDF

By Xinkun Wang

A useful consultant to the hugely Dynamic quarter of vastly Parallel Sequencing

The improvement of genome and transcriptome sequencing applied sciences has ended in a paradigm shift in lifestyles technological know-how examine and disorder prognosis and prevention. Scientists are actually capable of see how human ailments and phenotypic alterations are hooked up to DNA mutation, polymorphism, genome constitution, and epigenomic abnormality. Next-Generation Sequencing facts Analysis exhibits how next-generation sequencing (NGS) applied sciences are utilized to rework approximately all elements of organic learn.

The publication walks readers during the a number of phases of NGS facts iteration and research in an easy-to-follow type. It covers each step in each one level, from the drawing board of experimental layout, pattern processing, sequencing method formula, the early degree of base calling, reads caliber payment and information preprocessing to the intermediate level of mapping reads to a reference genome and normalization to extra complex phases particular to every program. All significant purposes of NGS are lined, including:

  • RNA-seq: mRNA-seq and small RNA-seq

  • Genotyping and variation discovery via genome re-sequencing

  • De novo genome assembly

  • ChIP-seq to check DNA–protein interaction

  • Methylated DNA sequencing on epigenetic regulation

  • Metagenome research via group genome shotgun sequencing

Before detailing the analytic steps for every of those purposes, the e-book offers the bits and bobs of the main familiar NGS structures, with side-by-side comparisons of key technical facets. This is helping practitioners come to a decision which platform to exploit for a selected undertaking. The booklet additionally bargains a viewpoint at the improvement of DNA sequencing applied sciences, from Sanger to future-generation sequencing applied sciences.

The booklet discusses suggestions and ideas that underlie every one analytic step, in addition to software program instruments for implementation. It highlights key good points of the instruments whereas omitting tedious info to supply an easy-to-follow consultant for practitioners in lifestyles sciences, bioinformatics, and biostatistics. moreover, references to distinctive descriptions of the instruments are given for extra interpreting if wanted. The accompanying web site for the ebook offers step by step, real-world examples of ways to use the instruments coated within the textual content to investigate tasks. the entire instruments are freely on hand to educational users.

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